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Ten Cases of Taenia saginata Infection Confirmed by Analysis of the Internal Transcribed Spacer 1 rDNA Region in the Republic of Korea

Song SM, Yun HS, VanBik D, Chang HH, Lee SA, Kim SW, Ryoo N, Eun DY, Lee NY, Goo YK, Hong Y, Ock M, Cha HJ, Chung DI

From October 2015 to August 2018, tapeworm proglottids were obtained from 10 patients who were residents of Daegu and Gyeongbuk provinces and had a history of raw beef consumption. Most...
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Comparison of the Utility of dnaJ and 16S rDNA Sequences for Identification of Clinical Isolates of Vibrio Species

Choi IS, Moon DS, Park G, Kang SH, Kim CM, Ahn YJ, Kim DM, Yun NR, Lim DH, Shin SH, Kook JK, Chang YH, Jang SJ

BACKGROUND: Among the many Vibrio species that can cause infections in humans, several species can cause a fatal outcome. Therefore, accurate identification of Vibrio species is very important. Since some...
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Utility of a Direct 16S rDNA PCR and Sequencing for Etiological Diagnosis of Infective Endocarditis

Kim MS, Chang J, Kim MN, Choi SH, Jung SH, Lee JW, Sung H

BACKGROUND: Cases of infective endocarditis (IE) require prompt etiological diagnosis for effective treatment. Molecular methods can aid in rapid and reliable diagnosis of culture-negative IE cases. We evaluated the utility...
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Identification of Leptospira species of Korean Isolates using Phylogenetic Analysis of Polymerase Chain Reaction-amplified 16S rDNA and LipL32 Genes

Park KH, Choi YJ, Shin SH, Choi MK, Kim YW, Jang WJ

In this study, we selected only serologically identified 15 Leptosira interrogans isolates in the past and analyzed and identified them by using molecular method. The partial 16S rDNA and LipL32...
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Molecular Taxonomy of Ganoderma cupreum from Southern India Inferred from ITS rDNA Sequences Analysis

Kaliyaperumal M

  • KMID: 2312711
  • Mycobiology.
  • 2013 Dec;41(4):248-251.
Ganoderma is a cosmopolitan wood-rot basidiomycete that has been extensively studied for its pathogencity and medicinal properties. Identification of Ganoderma based on macro-microscopic features led to large number of synonyms...
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The Application of 26S rDNA PCR-RFLP in the Identification and Classification of Malassezia Yeast

Lee YW, Lim SH, Ahn KJ

  • KMID: 1513601
  • Korean J Med Mycol.
  • 2006 Sep;11(3):141-153.
BACKGROUND: Malassezia yeast are lipophilic fungi that are found in 75~80% of healthy adults. The yeast are known to be associated with pityriasis versicolor, seborrheic dermatitis, Malassezia folliculitis, and recently...
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Identification of bacteria from the peri-implant sulcus of orthodontic mini-implants using 16S rDNA clone library

Lim SH, Kim KW, Yoo SY, Kook JK, Chang YI

  • KMID: 2273584
  • Korean J Orthod.
  • 2006 Aug;36(4):251-262.
OBJECTIVE: The purpose of this study was to compare the bacterial flora at the peri-implant sulcus of the orthodontic mini-implant placed in the alveolar mucosa with the bacterial flora at...
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Evaluation of a 16S rDNA PCR Assay for Detection of Bacterial Pathogens in Blood Culture Broth

Jang SJ, Kim JH, Kim YS, Shin JH, Park G, Chaulagain BP, Moon DS, Park YJ

  • KMID: 2146993
  • Korean J Clin Microbiol.
  • 2006 Apr;9(1):64-70.
BACKGROUND: Rapid detection of pathogens in blood is important in patient management, because the mortality rate associated with bloodstream infections is very high. We evaluated the efficiency of a 16S...
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Sequence Analysis of the Internal Transcribed Spacer of Ribosomal DNA in the Genus Rhizopus

Park YJ, Min BR

  • KMID: 2312459
  • Mycobiology.
  • 2005 Jun;33(2):109-112.
The internal transcribed spacer (ITS) regions including the 3'-end of 18S rRNA gene, 5.8S rRNA gene and the 5'-end of the 28S rRNA gene of Rhizopus spp. were amplified by...
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Strain Differentiation of Trichophyton rubrum Using Polymorphism of rDNA Intergenic Spacer

Choi JS, Shin DH, Seung JJ, Kim KH

  • KMID: 2141962
  • Korean J Med Mycol.
  • 2004 Dec;9(4):206-213.
BACKGROUND: In Korea, Trichophyton (T.) rubrum is occupied more than 80% of causative fungi of dermatophytosis. Strain differentiation of T. rubrum is essential for epidermiologic study. OBJECTIVE: The aim of...
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A Comparison of ID 32 GN System with Amplified Ribosomal DNA Restriction Analysis for Identification of Acinetobacter baumannii

Shin MG, Kim SH, Lee JC, Cho D, Kee SJ, Shin JH, Suh SP, Ryang DW

  • KMID: 1730182
  • Korean J Lab Med.
  • 2004 Apr;24(2):107-112.
BACKGROUND: The glucose -acidifying genomic species 1, 2, 3 and 13 of the genus Acinetobacter are highly related genetically and may be difficult to differentiate by phenotypic identification schemes using...
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Ribosomal DNA Gene Analysis of Dematiaceous Fungi Using Polymerase Chain Reaction-Restriction Fragment Length Polymorphism

Suh MK, Kim YJ, Kwon SW, Kim JC

  • KMID: 2086742
  • Korean J Dermatol.
  • 2003 Nov;41(11):1478-1486.
BACKGROUND: There are three kinds of diseases caused by dematiaceous fungi: chromoblastomycosis, phaeohyphomycosis, and eumycotic mycetoma. The dematiaceous fungi have been identified and classified by morphological, biochemical and physiological tests....
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Prokaryotic 16S rDNAs from Various Prokaryotes That Are Suggested as Etiologies of Idiopathic Chronic Prostatitis

Youn WY, Lee GH

  • KMID: 2293557
  • Korean J Urol.
  • 2003 Sep;44(9):929-933.
PURPOSE: Specific microorganisms, such as C trachomatis, Mycoplasma and T vaginalis, are rarely detected in idiopathic chronic prostatitis. However, fastidious and nonculturable microorganisms may be important in the etiology of...
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Restriction Analyses of PCR Amplified Partial SSU Ribosomal DNA to Distinguish Arbuscular Mycorrhizal Fungi from Other Fungi Colonizing Plant Roots

Lee JK, Tae MS, Eom AH, Lee SS

  • KMID: 2312402
  • Mycobiology.
  • 2003 Jun;31(2):68-73.
Roots of Glycine max and Miscanthus sinensis and soil samples were collected from various field sites at Goesan, Chungbuk in Korea. Microscopic observations of the roots indicated high colonization rates...
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Identification of putative pathogens in acute endodontic infections by PCR based on 16S rDNA

Kim JH, Yoo SY, Lim SA, Kook JK, Lim SS, Park SH, Hwang HK

The purpose of this study was to investigate the frequency of 7 putative pathogens in endodontic infections. The specimens were collected from infected pulpal tissue of patients who were referred...
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The Determination of the Partial 28S Ribosomal DNA Sequences and Rapid Detection of Phellinus linteus and Related species

Park HS, Kim GY, Nam BH, Lee SJ, Lee JD

  • KMID: 2312374
  • Mycobiology.
  • 2002 Jun;30(2):82-87.
Species of Phellinus were known to harmful fungi causing white pocket rot and severe plant disease such as canker or heart-rot in living trees in the West, but some species...
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Strain Differentiation of Trichophyton rubrum Isolated from 2 Sites of the Same Patients by Analysis of Ribosomal DNA Nontranscribed Spacer

Kim HC, Shin DH, Choi JS, Kim KH

  • KMID: 2141968
  • Korean J Med Mycol.
  • 2002 Jun;7(2):69-77.
BACKGROUND: In Korea, Trichophyton (T.) rubrum is the most common dermatophyte and occupied more than 80% of all isolates. Although strains differentiation is essential for epidemiologic studies, differentiation of T....
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Sequence Analyses of PCR Amplified Partial SSU of Ribosomal DNA for Identifying Arbuscular Mycorrhizal Fungi in Plant Roots

Tae MS, Eom AH, Lee SS

  • KMID: 2312358
  • Mycobiology.
  • 2002 Mar;30(1):13-17.
The genomic DNAs were extracted from roots of Glycine max and Sorghum bicolor, and compared with those from spores of two arbuscular mycorrhizal (AM) fungi, Glomus mosseae and Scutellospora heterogama....
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Identification of Fastidious Mycobacteria other than M. tuberculosis ( MOTT ) by Comparative Sequence Analysis of rpoB and 16S rDNA

Kim BJ, Im SI, Kim YW, Bai GH, Kim SJ, Lee KH, Cha CY, Kook YH

  • KMID: 1572904
  • J Bacteriol Virol.
  • 2002 Mar;32(1):39-45.
Conventional tests for the identification of mycobacteria may frequently result in erroneous identification and underestimate the diversity within the genus Mycobacterium. However, this problem can be overcome by molecular approach...
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Phylogenetic Analysis of Caterpillar Fungi by Comparing ITS 1-5.8S-ITS 2 Ribosomal DNA Sequences

Park JE, Kim GY, Park HS, Nam BH, An WG, Cha JH, Lee TH, Lee JD

  • KMID: 2312345
  • Mycobiology.
  • 2001 Sep;29(3):121-131.
This study was carried out to identify the phylogenetic relationships among several caterpillar fungi by comparing the sequences of internal transcribed spacer regions (ITS1 and ITS2) and 5.8S ribosomal DNA...
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