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In Silico Identification of 6-Phosphogluconolactonase Genes that are Frequently Missing from Completely Sequenced Bacterial Genomes

Jeong H, Kim JF, Park HS

  • KMID: 2166245
  • Genomics Inform.
  • 2006 Dec;4(4):182-187.
6-Phosphogluconolactonase (6PGL) is one of the key enzymes in the ubiquitous pathways of central carbon metabolism, but bacterial 6PGL had been long known as a missing enzyme even after complete bacterial...
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Compiling Multicopy Single-Stranded DNA Sequences from Bacterial Genome Sequences

Yoo W, Lim D, Kim S

A retron is a bacterial retroelement that encodes an RNA gene and a reverse transcriptase (RT). The former, once transcribed, works as a template primer for reverse transcription by the...
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Genes Involved in the Biosynthesis and Transport of Acinetobactin in Acinetobacter baumannii

Hasan T, Choi CH, Oh MH

Pathogenic bacteria survive in iron-limited host environments by using several iron acquisition mechanisms. Acinetobacter baumannii, causing serious infections in compromised patients, produces an iron-chelating molecule, called acinetobactin, which is composed...
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New Approach to the Analysis of Palindromic Structure in Genome Sequences

Kim SW, Lee YS, Choi SH, Chae SH, Kim DW, Park HS

  • KMID: 2166239
  • Genomics Inform.
  • 2006 Dec;4(4):167-169.
PABAP (Palindrome Analysis by BLAST Program) is an analysis system that identifies palindromic sequences from a large genome sequence up to several megabases long. It uses NCBI BLAST as a searching...
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Current Challenges in Bacterial Transcriptomics

Cho S, Cho Y, Lee S, Kim J, Yum H, Kim SC, Cho BK

Over the past decade or so, dramatic developments in our ability to experimentally determine the content and function of genomes have taken place. In particular, next-generation sequencing technologies are now...
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Back to the Ends: Chromosomal DNA

Lee MH, Suh D

  • KMID: 2322080
  • J Korean Soc Pediatr Nephrol.
  • 2008 Apr;12(1):1-10.
Nucleic scids transfer the genetic information for serving a central biological purpose. The nucleic acids are polymers of nucleotides and they are mainly ribonucleic acid(RNA) and deoxyribonucleic acid(DNA). The nucleotides...
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Systematic Analysis of the Anticancer Agent Taxol-Producing Capacity in Colletotrichum Species and Use of the Species for Taxol Production

Choi J, Park JG, Ali MS, Choi SJ, Baek KH

Paclitaxel (taxol) has long been used as a potent anticancer agent for the treatment of many cancers. Ever since the fungal species Taxomyces andreanae was first shown to produce taxol...
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Molecular and genomic features of Mycobacterium bovis strain 1595 isolated from Korean cattle

Kim N, Jang Y, Kim JK, Ryoo S, Kwon KH, Kim M, Kang SS, Byeon HS, Lee HS, Lim YH, Kim JM

The aim of this study was to investigate the molecular characteristics and to conduct a comparative genomic analysis of Mycobacterium (M.) bovis strain 1595 isolated from a native Korean cow....
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High Prevalence of Multiple Strain Colonization of Helicobacter pylori in Korean Patients: DNA Diversity Among Clinical Isolates from the Gastric Corpus, Antrum and Duodenum

Kim JW, Kim JG, Chae SL, Cha YJ, Park SM

  • KMID: 759677
  • Korean J Intern Med.
  • 2004 Mar;19(1):1-9.
BACKGROUND: The aims of our study were to determine the correlation of the strain variation and degree of homogeneity of infecting Helicobacter pylori (H. pylori) with their disease outcomes, and...
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