- Codon usage and bias in mitochondrial genomes of parasitic platyhelminthes
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Le TH, McManus DP, Blair D
- KMID: 1720485
- Korean J Parasitol.
- 2004 Dec;42(4):159-167.
- doi: 10.3347/kjp.2004.42.4.159
Sequences of the complete protein-coding portions of the mitochondrial (mt) genome were analysed for 6 species of cestodes (including hydatid tapeworms and the pork tapeworm) and 5 species of trematodes... -
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- Complete Mitochondrial Genome of the Chagas Disease Vector, Triatoma rubrofasciata
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Dong L, Ma X, Wang M, Zhu D, Feng Y, Zhang Y, Wang J
- KMID: 2426758
- Korean J Parasitol.
- 2018 Oct;56(5):515-519.
- doi: 10.3347/kjp.2018.56.5.515
Triatoma rubrofasciata is a wide-spread vector of Chagas disease in Americas. In this study, we completed the mitochondrial genome sequencing of T. rubrofasciata. The total length of T. rubrofasciata mitochondrial... -
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- Cloning, Sequencing and Expression in Escherichia coli of Herpes simple virus Type-1 Thymidine Kinase Gene
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Lee HB, Kim JW, Kang H, Cha SC
- KMID: 1551987
- J Korean Soc Virol.
- 1998 Sep;28(3):215-224.
Cloning, sequencing and expressing in E. coli of the thymidine kinase (TK) gene of Herpes simplex virus type-1 (HSV-1) strain F was investigated. The TK gene, located in the BamHI... -
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- Improved cycle sequencing of GC-rich DNA template
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Choi JS, Kim JS, Joe CO, Kim SH, Ha KS, Park YM
- KMID: 755022
- Exp Mol Med.
- 1999 Mar;31(1):20-24.
Even when DNA sequencing of purified DNA template failed under the optimal condition, it can be generally contributed to high GC content. GC-rich region of template causes a secondary structure to produce... -
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- Sequence Analysis of cytb Gene in Echinococcus granulosus from Western China
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Zhong X, Wang N, Hu D, Wang J, Liu T, Gu X, Wang S, Peng X, Yang G
- KMID: 1792171
- Korean J Parasitol.
- 2014 Apr;52(2):205-209.
Echinococcus granulosus is the causative agent of cystic echinococcosis with medical and veterinary importance in China. Our main objective was to discuss the genotypes and genetic diversity of E. granulosus... -
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- Complete genome sequence of a methicillin-resistant Staphylococcus schleiferi strain from canine otitis externa in Korea
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Lee GY, Yang SJ
- KMID: 2469026
- J Vet Sci.
- 2020 Jan;21(1):e11.
- doi: 10.4142/jvs.2020.21.e11
The increase in canine skin and soft tissue infections, such as pyoderma and otitis, caused by Staphylococcus schleiferi strains, is of significant zoonotic concern. In this study, we report the... -
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- Characterization of the Repeat Sequences of Varicella-Zoster Virus
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Won YH, Kim JI, Kim YY, Lee CH
- KMID: 1737321
- J Bacteriol Virol.
- 2014 Dec;44(4):326-335.
- doi: 10.4167/jbv.2014.44.4.326
Varicella-zoster virus (VZV) is a causative agent for shingles and herpes zoster. The genomes of VZV contain five reiteration (R) sequences and an origin of replication (ORI) sequences composed of... -
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- Comparative Analysis of Predicted Gene Expression among Crenarchaeal Genomes
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Das S, Chottopadhyay B, Sahoo S
- KMID: 2375583
- Genomics Inform.
- 2017 Mar;15(1):38-47.
- doi: 10.5808/GI.2017.15.1.38
Research into new methods for identifying highly expressed genes in anonymous genome sequences has been going on for more than 15 years. We presented here an alternative approach based on... -
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- Codon Usage Bias of Human Cytomegalovirus Genes with Different Evolutionary Conservancy
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Kim YY, Lee CH
- KMID: 1502000
- J Bacteriol Virol.
- 2013 Dec;43(4):317-327.
- doi: 10.4167/jbv.2013.43.4.317
Human cytomegalovirus (HCMV) is a member of beta-herpesvirus and contains a double-stranded genome with longer than 230 Kbp. HCMV infection of human is mostly asymptomatic, but often causes fatal diseases... -
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- Characterization and Sequence Analysis of Helicobacter pylori Cryptic Plasmid (pHP489)
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Cho MJ, Song JY, Choi YJ, Lee WK, Baik SC, Ryu BD, Choi SH, Jeon YS, Lee IG, Rhee KH
- KMID: 2146924
- J Korean Soc Microbiol.
- 1998 Aug;33(4):343-352.
The DNA sequence of a plasmid named pHP489 of Helicobacter pylori strain 489 was determined and analyzed to characterize its replication apparatus. The pHP489 plasmid consisted of 1,222 bp and... -
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- Genomic Insights into the Rice Blast Fungus through Estimation of Gene Emergence Time in Phylogenetic Context
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Choi J, Lee JJ, Jeon J
- KMID: 2434564
- Mycobiology.
- 2018 Dec;46(4):361-369.
- doi: 10.1080/12298093.2018.1542970
The rice blast fungus, Magnaporthe oryzae, is an important pathogen of rice plants. It is well known that genes encoded in the genome have different evolutionary histories that are related... -
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- Draft Genome of Toxocara canis, a Pathogen Responsible for Visceral Larva Migrans
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Kong J, Won J, Yoon J, Lee U, Kim JI, Huh S
- KMID: 2367416
- Korean J Parasitol.
- 2016 Dec;54(6):751-758.
- doi: 10.3347/kjp.2016.54.6.751
This study aimed at constructing a draft genome of the adult female worm Toxocara canis using next-generation sequencing (NGS) and de novo assembly, as well as to find new genes... -
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