Mycobiology.
2020 Jun;48(3):240-244. 10.1080/12298093.2020.1756134.
Draft Genome Sequence of Alternaria alternata JS-1623, a Fungal Endophyte of Abies koreana
- Affiliations
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- 1Department of Plant Medicine, Sunchon National University, Suncheon, Korea
- 2Department of Agricultural Biotechnology, Interdisciplinary Program in Agricultural Genomics, Center for Fungal Genetic Resources, and Center for Fungal Pathogenesis, Seoul National University, Seoul, Korea
- 3Microbiology Resources Division, National Institute of Biological Resources, Incheon, Korea
- KMID: 2504112
- DOI: http://doi.org/10.1080/12298093.2020.1756134
Abstract
- Alternaria alternata JS-1623 is an endophytic fungus isolated from a stem tissue of Korean fir, Abies koreana. Ethyl acetate extracts of culture filtrates exhibited anti-inflammatory activity in LPS induced microglia BV-2 cell without cytotoxicity. Here we report a 33.67Mb sized genome assembly of JS-1623 comprised of 13 scaffolds with N50 of 4.96 Mb, and 92.41% of BUSCO completeness. GC contents were 50.97%. Of the 11,197 genes annotated, gene families related to the biosynthesis of secondary metabolites or transcription factors were identified.
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