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Next-Generation Sequencing and Epigenomics Research: A Hammer in Search of Nails

Sarda S, Hannenhalli S

After the initial enthusiasm of the human genome project, it became clear that without additional data pertaining to the epigenome, i.e., how the genome is marked at specific developmental periods,...
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Year-in-Review of Lung Cancer

Son JW

In the last several years, we have made slow but steady progress in understanding molecular biology of lung cancer. This review is focused on advances in understanding the biology of...
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Building the Frequency Profile of the Core Promoter Element Patterns in the Three ChromHMM Promoter States at 200bp Intervals: A Statistical Perspective

Lent H, Lee KE, Park HS

Recently, the Encyclopedia of DNA Elements (ENCODE) Analysis Working Group converted data from ChIP-seq analyses from the Broad Histone track into 15 corresponding chromatic maps that label sequences with different...
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Genomics and proteomics in stem cell research: the road ahead

Ahn SM, Simpson R, Lee B

Stem cell research has been widely studied over the last few years and has attracted increasing attention from researchers in all fields of medicine due to its potential to treat...
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Role of Putative Epigenetic Mechanisms in the Intergenerational Transmission of Trauma Effects in “Comfort Women” Survivor Offspring

Park SC

No abstract available.
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Researches of Epigenetic Epidemiology for Infections and Radiation as Carcinogen

Bae JM

In recent years, a number of studies have been reported on the various types of cancer arising from epigenetic alterations, including reports that these epigenetic alterations occur as a result...
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Potential Epigenetic Biomarkers for Prostate Cancer Screening

Bae JM

No abstract available.
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Epigenetics of Male Fertility: Effects on Assisted Reproductive Techniques

Giacone F, Cannarella R, Mongioì L, Alamo A, Condorelli RA, Calogero A, La Vignera S

During the last decades the study of male infertility and the introduction of the assisted reproductive techniques (ARTs) has allowed to understand that normal sperm parameters do not always predict...
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Epigenetic Regulation of RUNX3 in Thyroid Carcinoma

Joung KH, Shong M

  • KMID: 2432929
  • Korean J Intern Med.
  • 2012 Dec;27(4):391-393.
No abstract available.
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Epigenomic Hard Drive Imprinting: A Hidden Code Beyond the Biological Death of Cancer Patients

Nilendu P, Sharma NK

Several genetic and epigenetic theories have been suggested to explain the intricacies of life and death. However, several questions remain unsettled regarding cellular death events, particularly of living tissue in...
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Epigenetic Alterations in Inflammatory Bowel Disease and Cancer

Yi JM, Kim TO

Overwhelming evidences supports the idea that inflammatory bowel disease (IBD) is caused by a complex interplay between genetic alterations of multiple genes and an aberrant interaction with environmental factors. There...
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Epigenetic Modifications: Novel Therapeutic Approach for Thyroid Cancer

Zhu X, Cheng SY

The incidence of thyroid cancer is growing the fastest among all cancers in the United States, especially in women. The number of patients with thyroid neoplasm is part of an...
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A Review of Three Different Studies on Hidden Markov Models for Epigenetic Problems: A Computational Perspective

Lee KE, Park HS

Recent technical advances, such as chromatin immunoprecipitation combined with DNA microarrays (ChIp-chip) and chromatin immunoprecipitation-sequencing (ChIP-seq), have generated large quantities of high-throughput data. Considering that epigenomic datasets are arranged over...
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Trans-differentiation via Epigenetics: A New Paradigm in the Bone Regeneration

Cho YD, Ryoo HM

In regenerative medicine, growing cells or tissues in the laboratory is necessary when damaged cells can not heal by themselves. Acquisition of the required cells from the patient's own cells...
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Epigenetic modifications and diabetic nephropathy

Reddy MA, Park JT, Natarajan

  • KMID: 2224212
  • Kidney Res Clin Pract.
  • 2012 Sep;31(3):139-150.
Diabetic nephropathy (DN) is a major complication associated with both type 1 and type 2 diabetes, and a leading cause of end-stage renal disease. Conventional therapeutic strategies are not fully...
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Single-Cell Sequencing in Cancer: Recent Applications to Immunogenomics and Multi-omics Tools

Sierant MC, Choi J

Tumor heterogeneity, the cellular mosaic of multiple lineages arising from the process of clonal evolution, has continued to thwart multi-omics analyses using traditional bulk sequencing methods. The application of single-cell...
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Influence of Polycomb Proteins and Epigenetic Transcriptional Modifiers on the Development and Activation of T Lymphocytes

Chun T

Transcriptional regulation of a gene is not always correlated with genetic information inherited from parents because the transcription of specific genes is often governed by the modification of chromatin structure....
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Epigenetic biomarkers: a step forward for understanding periodontitis

Lindroth A, Park YJ

Periodontitis is a common oral disease that is characterized by infection and inflammation of the tooth supporting tissues. While its incidence is highly associated with outgrowth of the pathogenic microbiome,...
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Epigenetics: A key paradigm in reproductive health

Bunkar N, Pathak N, Lohiya NK, Mishra PK

It is well established that there is a heritable element of susceptibility to chronic human ailments, yet there is compelling evidence that some components of such heritability are transmitted through...
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Classification of Colon Cancer Patients Based on the Methylation Patterns of Promoters

Choi W, Lee J, Lee JY, Lee SM, Kim DW, Kim YJ

Diverse somatic mutations have been reported to serve as cancer drivers. Recently, it has also been reported that epigenetic regulation is closely related to cancer development. However, the effect of...
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