- PrimateDB: Development of Primate Genome DB and Web Service
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Woo T, Shin G, Kang T, Kim B, Seo J, Kim SS, Kim CB
- KMID: 1572638
- Genomics Inform.
- 2005 Jun;3(2):73-76.
The comparative analysis of the human and primate genomes including the chimpanzee can reveal unique types of information impossible to obtain from comparing the human genome with the genomes of... -
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- Foldback Intercoil DNA and the Mechanism of DNA Transposition
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Kim BD
- KMID: 2009094
- Genomics Inform.
- 2014 Sep;12(3):80-86.
- doi: 10.5808/GI.2014.12.3.80
Foldback intercoil (FBI) DNA is formed by the folding back at one point of a non-helical parallel track of double-stranded DNA at as sharp as 180degrees and the intertwining of... -
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- Alu and L1 Retroelements Are Correlated with the Tissue Extent and Peak Rate of Gene Expression, Respectively
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Kim TM, Jung YC, Rhyu MG
- KMID: 1778557
- J Korean Med Sci.
- 2004 Dec;19(6):783-792.
- doi: 10.3346/jkms.2004.19.6.783
We exploited the serial analysis of gene expression (SAGE) libraries and human genome database in silico to correlate the breadth of expression (BOE; housekeep-ing versus tissue-specific genes) and peak rate... -
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- Compiling Multicopy Single-Stranded DNA Sequences from Bacterial Genome Sequences
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Yoo W, Lim D, Kim S
- KMID: 2166537
- Genomics Inform.
- 2016 Mar;14(1):29-33.
- doi: 10.5808/GI.2016.14.1.29
A retron is a bacterial retroelement that encodes an RNA gene and a reverse transcriptase (RT). The former, once transcribed, works as a template primer for reverse transcription by the... -
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- Study of Modern Human Evolution via Comparative Analysis with the Neanderthal Genome
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Ahmed M, Liang P
- KMID: 2166507
- Genomics Inform.
- 2013 Dec;11(4):230-238.
- doi: 10.5808/GI.2013.11.4.230
Many other human species appeared in evolution in the last 6 million years that have not been able to survive to modern times and are broadly known as archaic humans,... -
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- Genomic Features of Retroelements and Implications for Human Disease
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Kim HS
- KMID: 2284672
- Genomics Inform.
- 2005 Dec;3(4):133-141.
Most of the endogenous retroviral genes integrated into the primate genome after the split of New World monkeys in the Oligocene era, approximately 33 million years ago. Because they can... -
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- Gastric Mucosal Atrophy Impedes Housekeeping Gene Methylation in Gastric Cancer Patients
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Oh JH, Rhyu MG, Kim SI, Yun MR, Shin JH, Hong SJ
- KMID: 2437618
- Cancer Res Treat.
- 2019 Jan;51(1):267-279.
- doi: 10.4143/crt.2018.085
PURPOSE: Helicobacter pylori infection induces phenotype-stabilizing methylation and promotes gastric mucosal atrophy that can inhibit CpG-island methylation. Relationship between the progression of gastric mucosal atrophy and the initiation of CpG-island... -
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- Transposable Elements and Genome Size Variations in Plants
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Lee SI, Kim NS
- KMID: 2009095
- Genomics Inform.
- 2014 Sep;12(3):87-97.
- doi: 10.5808/GI.2014.12.3.87
Although the number of protein-coding genes is not highly variable between plant taxa, the DNA content in their genomes is highly variable, by as much as 2,056-fold from a 1C... -
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- Retrotransposon Microsatellite Amplified Polymorphism Strain Fingerprinting Markers Applicable to Various Mushroom Species
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Le QV, Won HK, Lee TS, Lee CY, Lee HS, Ro HS
- KMID: 1487337
- Mycobiology.
- 2008 Sep;36(3):161-166.
- doi: 10.4489/MYCO.2008.36.3.161
The retrotransposon marY1 is a gypsy family retroelement, which is detected ubiquitously within the fungal taxonomic groups in which mushrooms are included. To utilize marY1 as a molecular marker for... -
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- Structural Variation of Alu Element and Human Disease
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Kim S, Cho CS, Han K, Lee J
- KMID: 2353657
- Genomics Inform.
- 2016 Sep;14(3):70-77.
- doi: 10.5808/GI.2016.14.3.70
Transposable elements are one of major sources to cause genomic instability through various mechanisms including de novo insertion, insertion-mediated genomic deletion, and recombination-associated genomic deletion. Among them is Alu element... -
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- Detection of progressive and regressive phase and LINE-1 retrotransposon in transfected dogs with transmissible venereal tumor during chemotherapy
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Atalay Vural S, Haziroglu , Vural MR, Polat IM, Tunc AS
- KMID: 2420930
- J Vet Sci.
- 2018 Sep;19(5):620-626.
- doi: 10.4142/jvs.2018.19.5.620
Canine transmissible venereal tumor (CTVT) is a tumor that commonly occurs in genital and extragenital sites of both genders. Long interspersed nuclear elements (LINE-1) retrotransposon has a pivotal role in... -
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- Divergent long-terminal-repeat retrotransposon families in the genome of Paragonimus westermani
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Bae YA, Kong Y
- KMID: 662762
- Korean J Parasitol.
- 2003 Dec;41(4):221-231.
- doi: 10.3347/kjp.2003.41.4.221
To gain information on retrotransposons in the genome of Paragonimus westermani, PCR was carried out with degenerate primers, specific to protease and reverse transcriptase (rt) genes of long-terminal-repeat (LTR) retrotransposons.... -
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- Evolutionary course of CsRn1 long-terminal-repeat retrotransposon and its heterogeneous integrations into the genome of the liver fluke, Clonorchis sinensis
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Bae YA, Kong Y
- KMID: 662761
- Korean J Parasitol.
- 2003 Dec;41(4):209-219.
- doi: 10.3347/kjp.2003.41.4.209
The evolutionary course of the CsRn1 long-terminal-repeat (LTR) retrotransposon was predicted by conducting a phylogenetic analysis with its paralog LTR sequences. Based on the clustering patterns in the phylogenetic tree,... -
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